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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
UVM cis rs9876781 1 rs13091785 chr3:48494098 TREX1 chr3:48501186-48509043:+ -0.4 -4.88 9.42E-6 Longevity
UVM cis rs10935120 1 rs13096604 chr3:134250099 ANAPC13 chr3:134196547-134204865:- -0.47 -6.73 1.05E-8 Height
UVM cis rs1109114 1 rs13161048 chr5:148615269 AFAP1L1 chr5:148651401-148721365:+ -0.55 -4.62 2.35E-5 Body mass index
UVM cis rs1109114 1 rs13171669 chr5:148601243 AFAP1L1 chr5:148651401-148721365:+ 0.56 4.72 1.69E-5 Body mass index
UVM cis rs7017914 1 rs13252719 chr8:71734569 XKR9 chr8:71581600-71648176:+ 0.85 8.21 3.96E-11 Bone mineral density
UVM cis rs7017914 1 rs13253842 chr8:71625503 XKR9 chr8:71581600-71648176:+ 0.87 8.96 2.49E-12 Bone mineral density
UVM cis rs12237653 1 rs1331455 chr9:2557493 FLJ35024 chr9:2422702-2622373:- 1 5.55 8.58E-7 Gambling
UVM cis rs9876781 1 rs13314659 chr3:48449149 TREX1 chr3:48501186-48509043:+ 0.4 4.77 1.37E-5 Longevity
UVM cis rs10935120 1 rs13322305 chr3:134310791 ANAPC13 chr3:134196547-134204865:- 0.45 6.73 1.03E-8 Height
UVM cis rs13385191 1 rs13385191 chr2:20888265 C2orf43 chr2:20883803-21022827:- -0.59 -7.72 2.51E-10 Prostate cancer
UVM cis rs10935120 1 rs1357762 chr3:134264859 ANAPC13 chr3:134196547-134204865:- 0.46 6.87 6.1E-9 Height
UVM cis rs2028299 1 rs1371135 chr15:90391270 AP3S2 chr15:90373832-90456222:- -0.75 -6.51 2.35E-8 Type 2 diabetes
UVM cis rs1411478 1 rs1411478 chr1:180962282 STX6 chr1:180913175-180992046:- -0.57 -5.57 7.75E-7 Progressive supranuclear palsy
UVM cis rs11190604 1 rs1417823 chr10:102227886 SEC31B chr10:102246403-102289636:- 0.39 5.11 4.24E-6 Palmitoleic acid (16:1n-7) plasma levels
UVM cis rs10461617 1 rs1423620 chr5:56100996 C5orf35 chr5:56205103-56213010:+ 0.95 6.93 4.86E-9 Type 2 diabetes